This virology primer is meant to help the beginner understand viral infection and what is necessary to curtail it. Virology is a complicated subject, as is immunology, and the following is meant as a sort of a kindergarten of terms and events. We think it is helpful in understanding the biology of what happens in this type of infection.
What is a Virus?
Viruses are strange life forms. They have only the bare bones of biochemical equipment, barely enough to even qualify for the title of life form.
HIV virus particles (Photo courtesy of CDC)
- They have only one type of nucleic acid (either DNA or RNA, but not both.)
- They reproduce solely from this nucleic acid, whichever type it is.
- They do not have any metabolic enzymes.
- They are completely dependent on their host cell.
One little old individual virus creature is called a viral particle. Viral particles are so small (some are the size of a large protein molecule) that we cannot really call them creatures; they are more like particles, hence the term. The word virus is more correctly applied to a species or genus of virus rather than to the individual particles.
Group of influenza viruses
(Photo courtesy of CDC)
The nucleic acids (the DNA or RNA) within the viral particles are surrounded by a protein coat and sometimes by an additional fatty envelope. The capsid consists of this protein coat and any fatty layer. The capsid proteins are crucial to the virus' ability to attach and infect a host cell.
Viruses that have fatty envelopes generally do not last long in the environment as the fat is easily disrupted; these viruses tend to require direct contact with fresh body secretions to transmit the infection.
DNA is the double stranded nucleic acid (deoxyribonucleic acid) that serves as the blueprint for all proteins a cell can make. It enables the cell to live and function within a body. It essentially amounts to instructions on how to make different proteins.
Bullet-shaped rabies virus particles in brain tissue
(Photo courtesy of CDC)
When it comes time to make a protein, a DNA segment unzips its double strands, allowing messenger RNA to enter and bind. The messenger RNA forms a "negative" image of the DNA segment it is reading. The messenger RNA then leaves the cell nucleus and travels out into the cell's protoplasm, where its message is read by ribosomes. Ribosomes function to sequence transfer RNA based on the code presented by the strand of messenger RNA. Amino acids attached to the transfer RNA are linked together forming the protein coded by the original DNA segment.
The act of messenger RNA taking down the protein code from the original DNA segment is called transcription.
The canine parvovirus. Image by JY Sgro, UW-Madison
If you're interested, watch this YouTube video on DNA transcription (credit: ppornelubio).
The act of producing a protein from the segment of messenger RNA using transfer RNA is called translation. It is performed by cell organs called ribosomes.
See more detail in this video of protein translation (credit: DNA Learning Center via YouTube.com)
The capsid is specific about how it binds to a host cell. Not only must the host species be right but also the type of cell it binds. When the match is correct, the virus binds to the cell and injects its nucleic acids inside. There are several techniques that viruses use to accomplish this but all involve the capsid. The capsid is very specific about what host cells it can attach to, specific for species (dog, cat, human, etc.) as well as for cell type (blood cell, intestinal cell, brain cell etc.) Once the viral particle has injected its nucleic acids into the host cell, the next activity is to manufacture messenger RNA for the cell to translate into protein. The proteins that the viral nucleic acids make will shut down the cell's normal function and convert the cell into a factory for viral particle production.
- Some viruses simply contain ready-made messenger RNA and they just inject it into the host cell (like polio).
- Some viruses inject a negative of the messenger RNA they need and include with it an enzyme that will trick the host into making the usable messenger RNA from the negative (like rabies).
- Some viruses inject their DNA directly into the host cell. Messenger RNA is made from this DNA, just as it would be made from host DNA (poxviruses do this).
Regardless of the tricks the virus uses to make messenger RNA, once the messenger RNA is made, the host cell is doomed. Ribosomes line up on the strand of messenger RNA reading it and use transfer RNA to mass produce the protein coded. This will be a viral protein and its action will be to shut down normal cell function and dedicate the cell to the production of viral capsid and viral DNA.
Soon the host cell is little more than a bag of virus. These viral particles either bud off the surface of the host cell or the host cell simply explodes, leaving millions of new viral particles to seek new host cells. The only way to stop this process is for the immune system to recognize the infected cell early and destroy it before virus production becomes too advanced.
Want to see it happen? This Rufus Rajadurai YouTube video follows an HIV virus from attachment to a host cell, injection of its contents (nucleic acids, two enzymes to facilitate sneaking into the host's protein-making machinery, and one enzyme to help make new viral protein), and conversion of the host cell into a virus factory.
Watching a virus attack a cell may seem discouraging but the body has an entire immune system designed to repel such invasion. Infected cells express viral proteins, shapes that the immune system can recognize. Within the body are several groups of cells all created to respond against a specific shape. For example, B lymphocytes, which live in our lymph nodes, transform into antibody-producing plasma cells once they encounter their destined antigen. They produce Y-shaped antibodies that flood the circulation and bind the viral antigen, thus preventing virus from attaching to the host cell, clumping with other antibody-virus groupings to create a larger clump, which in turn attracts a cell called a macrophage. The macrophage is the body's "Pac man," swallowing and digesting debris.
Watch a YouTube video by Nucleus Medical Media in which a viral attack is foiled by antibodies.
Aside from antibodies, there are patrolling T-lymphocytes that identify viral or other inappropriate shapes on the surfaces of host cells. The T-cell can thus recognize a virally infected cell or even a cancer cell, attach, and destroy it before it causes harm.
Hopefully, between T-cell and antibody attack, the viral infection is removed from the body and status quo resumes.